Before you begin reading this guide, we recommend you run Elasticsearch Error Check-Up which analyzes 2 JSON files to detect many errors.
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This guide will help you check for common problems that cause the log ” Running cleanup operations on repository ” to appear. To understand the issues related to this log, read the explanation below about the following Elasticsearch concepts: admin, cluster, repositories and repository-azure.
Overview
An Elasticsearch cluster consists of a number of servers (nodes) working together as one. Clustering is a technology which enables Elasticsearch to scale up to hundreds of nodes that together are able to store many terabytes of data and respond coherently to large numbers of requests at the same time.
Search or indexing requests will usually be load-balanced across the Elasticsearch data nodes, and the node that receives the request will relay requests to other nodes as necessary and coordinate the response back to the user.
Notes and good things to know
The key elements to clustering are:
Cluster State – Refers to information about which indices are in the cluster, their data mappings and other information that must be shared between all the nodes to ensure that all operations across the cluster are coherent.
Master Node – Each cluster must elect a single master node responsible for coordinating the cluster and ensuring that each node contains an up-to-date copy of the cluster state.
Cluster Formation – Elasticsearch requires a set of configurations to determine how the cluster is formed, which nodes can join the cluster, and how the nodes collectively elect a master node responsible for controlling the cluster state. These configurations are usually held in the elasticsearch.yml config file, environment variables on the node, or within the cluster state.
Node Roles – In small clusters it is common for all nodes to fill all roles; all nodes can store data, become master nodes or process ingestion pipelines. However as the cluster grows, it is common to allocate specific roles to specific nodes in order to simplify configuration and to make operation more efficient. In particular, it is common to define a limited number of dedicated master nodes.
Replication – Data may be replicated across a number of data nodes. This means that if one node goes down, data is not lost. It also means that a search request can be dealt with by more than one node.
Common problems
Many Elasticsearch problems are caused by operations which place an excessive burden on the cluster because they require an excessive amount of information to be held and transmitted between the nodes as part of the cluster state. For example:
- Shards too small
- Too many fields (field explosion)
Problems may also be caused by inadequate configurations causing situations where the Elasticsearch cluster is unable to safely elect a Master node. This situation is discussed further in:
Backups
Because Elasticsearch is a clustered technology, it is not sufficient to have backups of each node’s data directory. This is because the backups will have been made at different times and so there may not be complete coherency between them. As such, the only way to backup an Elasticsearch cluster is through the use of snapshots, which contain the full picture of an index at any one time.
Cluster resilience
When designing an Elasticsearch cluster, it is important to think about cluster resilience. In particular – what happens when a single node goes down? And for larger clusters where several nodes may share common services such as a network or power supply – what happens if that network or power supply goes down? This is where it is useful to ensure that the master eligible nodes are spread across availability zones, and to use shard allocation awareness to ensure that shards are spread across different racks or availability zones in your data center.
Overview
An Elasticsearch snapshot provides a backup mechanism that takes the current state and data in the cluster and saves it to a repository (read snapshot for more information). The backup process requires a repository to be created first. The repository needs to be registered using the _snapshot endpoint, and multiple repositories can be created per cluster. The following repository types are supported:
Repository types
| Repository type | Configuration type |
|---|---|
| Shared file system | Type: “fs” |
| S3 | Type : “s3” |
| HDFS | Type :“hdfs” |
| Azure | Type: “azure” |
| Google Cloud Storage | Type : “gcs” |
Examples
To register an “fs” repository:
PUT _snapshot/my_repo_01
{
"type": "fs",
"settings": {
"location": "/mnt/my_repo_dir"
}
}Notes and good things to know
- S3, HDFS, Azure and Google Cloud require a relevant plugin to be installed before it can be used for a snapshot.
- The setting, path.repo: /mnt/my_repo_dir needs to be added to elasticsearch.yml on all the nodes if you are planning to use the repo type of file system. Otherwise, it will fail.
- When using remote repositories, the network bandwidth and repository storage throughput should be high enough to complete the snapshot operations normally, otherwise you will end up with partial snapshots.
Log Context
Log “Running cleanup operations on repository [{}][{}]” classname is TransportCleanupRepositoryAction.java.
We extracted the following from Elasticsearch source code for those seeking an in-depth context :
final BlobStoreRepository blobStoreRepository = (BlobStoreRepository) repository;
final StepListener repositoryDataListener = new StepListener();
repository.getRepositoryData(repositoryDataListener);
repositoryDataListener.whenComplete(repositoryData -> {
final long repositoryStateId = repositoryData.getGenId();
logger.info("Running cleanup operations on repository [{}][{}]"; repositoryName; repositoryStateId);
clusterService.submitStateUpdateTask("cleanup repository [" + repositoryName + "][" + repositoryStateId + ']';
new ClusterStateUpdateTask() {
private boolean startedCleanup = false;
